Package: tsvr 1.0.2
tsvr: Timescale-Specific Variance Ratio for Use in Community Ecology
Tools for timescale decomposition of the classic variance ratio of community ecology. Tools are as described in Zhao et al (in prep), extending commonly used methods introduced by Peterson et al (1975) <doi:10.2307/1936306>.
Authors:
tsvr_1.0.2.tar.gz
tsvr_1.0.2.zip(r-4.5)tsvr_1.0.2.zip(r-4.4)tsvr_1.0.2.zip(r-4.3)
tsvr_1.0.2.tgz(r-4.4-any)tsvr_1.0.2.tgz(r-4.3-any)
tsvr_1.0.2.tar.gz(r-4.5-noble)tsvr_1.0.2.tar.gz(r-4.4-noble)
tsvr_1.0.2.tgz(r-4.4-emscripten)tsvr_1.0.2.tgz(r-4.3-emscripten)
tsvr.pdf |tsvr.html✨
tsvr/json (API)
| # Install 'tsvr' in R: |
| install.packages('tsvr', repos = c('https://reumandc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/reumandc/tsvr/issues
Datasets:
- JRGdat - Percent cover data from Jasper Ridge Biological Preserve serpentine grassland site
Last updated 4 years agofrom:f8f7a72d4f. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 16 2024 |
| R-4.5-win | OK | Nov 16 2024 |
| R-4.5-linux | OK | Nov 16 2024 |
| R-4.4-win | OK | Nov 16 2024 |
| R-4.4-mac | OK | Nov 16 2024 |
| R-4.3-win | OK | Nov 16 2024 |
| R-4.3-mac | OK | Nov 16 2024 |
Exports:aggtscospectcv2cv2fget_comget_comnullget_tsget_tsvrget_vrget_wtsset_comset_comnullset_tsset_tsvrset_vrset_wtstsvreqtsvreq_classicvrvreqvreq_classicvreq_LdMvrfwts
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Aggregates a 'tsvreq_classic' object across a set of timescales; also the constructor function for class 'vreq_classic_ag'. | aggts |
| Calculate the cospectrum between all pairs of time series | cospect |
| Calculates various measures of population and community variability | cv2 |
| Compute a frequency-specific version of CVcom or CVcomip | cv2f |
| Error check a data matrix. | errcheck_data |
| Error check inputs for the creator function for the 'tsvreq' class. | errcheck_tsvreq |
| Error check inputs for the creator function for the 'vreq' class. | errcheck_vreq |
| Percent cover data from Jasper Ridge Biological Preserve serpentine grassland site | JRGdat |
| Print method for 'summary_tsvr' class | print.summary_tsvr |
| Set and get methods for classes in the 'tsvr' package | get_com get_com.default get_comnull get_comnull.default get_ts get_ts.default get_tsvr get_tsvr.default get_vr get_vr.default get_wts get_wts.default setget_methods set_com set_com.default set_comnull set_comnull.default set_ts set_ts.default set_tsvr set_tsvr.default set_vr set_vr.default set_wts set_wts.default |
| Creator function for the 'tsvreq' S3 class | tsvreq |
| Creator function for the 'tsvreq_classic' S3 class | tsvreq_classic |
| Basic methods for the 'tsvreq_classic' class | get_com.tsvreq_classic get_comnull.tsvreq_classic get_ts.tsvreq_classic get_tsvr.tsvreq_classic get_wts.tsvreq_classic plot.tsvreq_classic print.tsvreq_classic set_com.tsvreq_classic set_comnull.tsvreq_classic set_ts.tsvreq_classic set_tsvr.tsvreq_classic set_wts.tsvreq_classic summary.tsvreq_classic tsvreq_classic_methods |
| Basic methods for the 'tsvreq' class | get_com.tsvreq get_comnull.tsvreq get_ts.tsvreq get_tsvr.tsvreq get_wts.tsvreq plot.tsvreq print.tsvreq set_com.tsvreq set_comnull.tsvreq set_ts.tsvreq set_tsvr.tsvreq set_wts.tsvreq summary.tsvreq tsvreq_methods |
| Compute the classic or Loreau-de Mazancourt variance ratio | vr |
| Creator function for the 'vreq' S3 class | vreq |
| Creator function of 'vreq_classic' S3 class | vreq_classic |
| Basic methods for the 'vreq_classic_ag' class | get_com.vreq_classic_ag get_comnull.vreq_classic_ag get_ts.vreq_classic_ag get_vr.vreq_classic_ag print.vreq_classic_ag set_com.vreq_classic_ag set_comnull.vreq_classic_ag set_ts.vreq_classic_ag set_vr.vreq_classic_ag summary.vreq_classic_ag vreq_classic_ag_methods |
| Basic methods for the 'vreq_classic' class | get_com.vreq_classic get_comnull.vreq_classic get_vr.vreq_classic print.vreq_classic set_com.vreq_classic set_comnull.vreq_classic set_vr.vreq_classic summary.vreq_classic vreq_classic_methods |
| Creator function of 'vreq_LdM' S3 class | vreq_LdM |
| Basic methods for the 'vreq_LdM' class | get_com.vreq_LdM get_comnull.vreq_LdM get_vr.vreq_LdM print.vreq_LdM set_com.vreq_LdM set_comnull.vreq_LdM set_vr.vreq_LdM summary.vreq_LdM vreq_LdM_methods |
| Basic methods for the 'vreq' class | get_com.vreq get_comnull.vreq get_vr.vreq print.vreq set_com.vreq set_comnull.vreq set_vr.vreq summary.vreq vreq_methods |
| Compute the frequency-specific variance ratio | vrf |
| Compute the weights (wts) | wts |
